Cuvelier ML, Ortiz A, Kim E, Moehlig H, Richardson DE, Heidelberg JF, Archibald JM, Worden AZ: Widespread distribution of a unique marine protistan lineage. Environ Microbiol. 2008, 10: 1621-1634. 10.1111/j.1462-2920.2008.01580.x.
Article
CAS
Google Scholar
Kim E, Harrison JW, Sudek S, Jones MDM, Wilcox HM, Richards TA, Worden AZ, Archibald JM: Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life. Proc Natl Acad Sci USA. 2011, 108: 1496-10.1073/pnas.1013337108.
Article
CAS
Google Scholar
Not F, Latasa M, Marie D, Cariou T, Vaulot D, Simon N: A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the western english channel. Appl Environ Microbiol. 2004, 70: 4064-4072. 10.1128/AEM.70.7.4064-4072.2004.
Article
CAS
Google Scholar
Li WKW: Primary production of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: measurements from flow cytometric sorting. Limnol Oceanogr. 1994, 39: 169-175. 10.4319/lo.1994.39.1.0169.
Article
CAS
Google Scholar
Biegala IC, Not F, Vaulot D, Simon N: Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification fluorescence in situ hybridization and flow cytometry. Appl Environ Microbiol. 2003, 69: 5519-5529. 10.1128/AEM.69.9.5519-5529.2003.
Article
CAS
Google Scholar
Li W: From cytometry to macroecology: a quarter century quest in microbial oceanography. Aquat Microb Ecol. 2009, 57: 239-251.
Article
Google Scholar
Jardillier L, Zubkov MV, Pearman J, Scanlan DJ: Significant CO 2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean. ISME J. 2010, 4: 1180-1192. 10.1038/ismej.2010.36.
Article
CAS
Google Scholar
Tarran G, Heywood J, Zubkov M: Latitudinal changes in the standing stocks of nano-and picoeukaryotic phytoplankton in the Atlantic Ocean. Deep-Sea Res II Top Stud Oceanogr. 2006, 53: 1516-1529. 10.1016/j.dsr2.2006.05.004.
Article
Google Scholar
Sherr EB, Sherr BF: Bacterivory and herbivory: key roles of phagotrophic protists in pelagic food webs. Microb Ecol. 1994, 28: 223-235. 10.1007/BF00166812.
Article
CAS
Google Scholar
Jardillier L, Bettarel Y, Richardot M, Bardot C, Amblard C, Sime-Ngando T, Debroas D: Effects of viruses and predators on prokaryotic community composition. Microb Ecol. 2005, 50: 557-569. 10.1007/s00248-005-5030-y.
Article
Google Scholar
Worden AZ, Not F: Ecology and diversity of picoeukaryotes. Microbial ecology of the Oceans. Edited by: Kirchman DL. 2008, Hoboken, New Jersey: John Wiley and Sons, Inc, 2
Google Scholar
Lindell D, Post AF: Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea. Limnol Oceanogr. 1995, 40: 1130-1141. 10.4319/lo.1995.40.6.1130.
Article
Google Scholar
Qian PY, Wang Y, Lee OO, Lau SCK, Yang J, Lafi FF, Al-Suwailem A, Wong TY: Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing. ISME J. 2010, 5: 507-518.
Article
Google Scholar
Ngugi DK, Antunes A, Brune A, Stingl U: Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea. Mol Ecol. 2012, 21: 388-405. 10.1111/j.1365-294X.2011.05378.x.
Article
CAS
Google Scholar
Al-Najjar T, Badran MI, Richter C, Meyerhoefer M, Sommer U: Seasonal dynamics of phytoplankton in the gulf of Aqaba, Red Sea. Hydrobiologia. 2006, 579: 69-83.
Article
Google Scholar
Sommer U: Scarcity of medium-sized phytoplankton in the northern Red Sea explained by strong bottom-up and weak top-down control. Mar Ecol Prog Ser. 2000, 197: 19-25.
Article
Google Scholar
Sommer U, Berninger UG, Böttger-schnack R, Cornils A, Hagen W, Hansen T, Al-najjar T, Post AF, Schnack-schiel SB, Stibor H, Stübing D, Wickham S: Grazing during early spring in the gulf of Aqaba and the northern Red Sea. Mar Ecol Progr. 2002, 239: 251-261.
Article
Google Scholar
Dishon G, Dubinsky Z, Caras T, Rahav E, Bar-Zeev E, Tzubery Y, Iluz D: Optical habitats of ultraphytoplankton groups in the gulf of Eilat (Aqaba), Northern Red Sea. Int J Remote Sens. 2012, 33: 2683-2705. 10.1080/01431161.2011.619209.
Article
Google Scholar
Veldhuis MJW, Kraay GW: Cell abundance and fluorescence of picoplankton in relation to growth irradiance and nitrogen availability in the Red Sea. Neth J Sea Res. 1993, 31: 135-145. 10.1016/0077-7579(93)90003-B.
Article
CAS
Google Scholar
Behrenfeld MJ, O’Malley RT, Siegel DA, McClain CR, Sarmiento JL, Feldman GC, Milligan AJ, Falkowski PG, Letelier RM, Boss ES: Climate-driven trends in contemporary ocean productivity. Nature. 2006, 444: 752-755. 10.1038/nature05317.
Article
CAS
Google Scholar
Li WKW, Mclaughlin FA, Lovejoy C, Carmack EC: Smallest algae thrive as the arctic. Science. 2009, 326: 539-10.1126/science.1179798.
Article
CAS
Google Scholar
Edwards FJ: Climate and oceanography. Red sea. Edited by: Edwards AJ, Head S. 1987, New York: Pergamon Press, 45-69. 1
Chapter
Google Scholar
Stambler N: Bio-optical properties of the northern Red Sea and the gulf of Eilat (Aqaba) during winter 1999. J Sea Res. 2005, 54: 186-203. 10.1016/j.seares.2005.04.006.
Article
Google Scholar
Morcos SA: Physical and chemical oceanography of the Red Sea. Oceanogr Mar Biol Annu Rev. 1970, 8: 73-202.
Google Scholar
Romari K, Vaulot D: Composition and temporal variability of picoeukaryote communities at a coastal site of the english channel from 18S rDNA sequences. Limnol Oceanogr. 2004, 49: 784-798. 10.4319/lo.2004.49.3.0784.
Article
Google Scholar
Shi XL, Marie D, Jardillier L, Scanlan DJ, Vaulot D: Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean. PLoS One. 2009, 4: e7657-10.1371/journal.pone.0007657.
Article
Google Scholar
Del Campo J, Massana R: Emerging diversity within chrysophytes, choanoflagellates and bicosoecids based on molecular surveys. Protist. 2011, 162: 435-448. 10.1016/j.protis.2010.10.003.
Article
Google Scholar
Le Gall F, Rigaut-Jalabert F, Marie D, Garczarek L, Viprey M, Gobet A, Vaulot D: Picoplankton diversity in the South-East Pacific Ocean from cultures. Biogeosciences. 2008, 5: 203-214. 10.5194/bg-5-203-2008.
Article
Google Scholar
Massana R, Castresana J, Balagué V, Guillou L, Romari K, Groisillier A, Valentin K, Pedrós-Alió C: Phylogenetic and ecological analysis of novel marine stramenopiles. Appl Environ Microbiol. 2004, 70: 3528-3534. 10.1128/AEM.70.6.3528-3534.2004.
Article
CAS
Google Scholar
Worden A: Picoeukaryote diversity in coastal waters of the Pacific Ocean. Aquat Microb Ecol. 2006, 43: 165-175.
Article
Google Scholar
Demir-Hilton E, Sudek S, Cuvelier ML, Gentemann CL, Zehr JP, Worden AZ: Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus. ISME J. 2011, 5: 1095-1107. 10.1038/ismej.2010.209.
Article
CAS
Google Scholar
Not F, Latasa M, Scharek R, Viprey M, Karleskind P, Balague V, Ontoriaoviedo I, Cumino A, Goetze E, Vaulot D: Protistan assemblages across the Indian Ocean, with a specific emphasis on the picoeukaryotes. Deep-Sea Res I Oceanogr Res Pap. 2008, 55: 1456-1473. 10.1016/j.dsr.2008.06.007.
Article
Google Scholar
Cheung M, Chu K, Li C, Kwan H, Wong C: Genetic diversity of picoeukaryotes in a semi-enclosed harbour in the subtropical western Pacific Ocean. Aquat Microb Ecol. 2008, 53: 295-305.
Article
Google Scholar
Massana R: Eukaryotic picoplankton in surface oceans. Annu Rev Microbiol. 2011, 65: 91-110. 10.1146/annurev-micro-090110-102903.
Article
CAS
Google Scholar
Massana R, Balagué V, Guillou L, Pedrós-Alió C: Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches. FEMS Microbiol Ecol. 2004, 50: 231-243. 10.1016/j.femsec.2004.07.001.
Article
CAS
Google Scholar
Gradinger R, Weisse T, Pillen T: Significance of Picocyanobacteria in the Red Sea and the gulf of Aden. Bot Mar. 1992, 35: 245-250.
Article
Google Scholar
Zhu F, Massana R, Not F, Marie D, Vaulot D: Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiol Ecol. 2005, 52: 79-92. 10.1016/j.femsec.2004.10.006.
Article
CAS
Google Scholar
Marie D, Shi XL, Rigaut-Jalabert F, Vaulot D: Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the english channel. FEMS Microbiol Ecol. 2010, 72: 165-178. 10.1111/j.1574-6941.2010.00842.x.
Article
CAS
Google Scholar
Fuller N, Tarran G: Molecular analysis of photosynthetic picoeukaryote community structure along an Arabian sea transect. Limnol Oceanogr. 2006, 51: 2502-2514. 10.4319/lo.2006.51.6.2502.
Article
CAS
Google Scholar
Kirkham AR, Jardillier LE, Tiganescu A, Pearman J, Zubkov MV, Scanlan DJ: Basin-scale distribution patterns of photosynthetic picoeukaryotes along an Atlantic meridional transect. Environ Microbiol. 2011, 13: 975-990. 10.1111/j.1462-2920.2010.02403.x.
Article
CAS
Google Scholar
Moon-van Der Staay SY, Van der Staay GWM, Guillou L, Vaulot D, Claustre H, Medlin LK: Abundance and diversity of prymnesiophytes in the picoplankton community from the equatorial Pacific Ocean inferred from 18S rDNA sequences. Limnol Oceanogr. 2000, 45: 98-109. 10.4319/lo.2000.45.1.0098.
Article
CAS
Google Scholar
Not F, Gausling R, Azam F, Heidelberg JF, Worden AZ: Vertical distribution of picoeukaryotic diversity in the Sargasso sea. Environ Microbiol. 2007, 9: 1233-1252. 10.1111/j.1462-2920.2007.01247.x.
Article
CAS
Google Scholar
Guillou L, Viprey M, Chambouvet A, Welsh RM, Kirkham AR, Massana R, Scanlan DJ, Worden AZ: Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata). Environ Microbiol. 2008, 10: 3349-3365. 10.1111/j.1462-2920.2008.01731.x.
Article
CAS
Google Scholar
Kim S, Park MG, Kim KY, Kim CH, Yih W, Park JS, Coats DW: Genetic diversity of parasitic dinoflagellates in the genus amoebophrya and its relationship to parasite biology and biogeography. J Eukaryot Microbiol. 2008, 55: 1-8. 10.1111/j.1550-7408.2007.00295.x.
Article
Google Scholar
Frias-Lopez J, Thompson A, Waldbauer J, Chisholm SW: Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters. Environ Microbiol. 2009, 11: 512-525. 10.1111/j.1462-2920.2008.01793.x.
Article
CAS
Google Scholar
Massana R, Unrein F, Rodríguez-Martínez R, Forn I, Lefort T, Pinhassi J, Not F: Grazing rates and functional diversity of uncultured heterotrophic flagellates. ISME J. 2009, 3: 588-596. 10.1038/ismej.2008.130.
Article
CAS
Google Scholar
Martinez-Garcia M, Brazel D, Poulton NJ, Swan BK, Gomez ML, Masland D, Sieracki ME, Stepanauskas R: Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. ISME J. 2012, 6: 703-707. 10.1038/ismej.2011.126.
Article
CAS
Google Scholar
Kimor B, Gordon N, Neori A: Symbiotic associations among the microplankton in oligotrophic marine environments, with special reference to the gulf of Aqaba, Red Sea. J Plankton Res. 1992, 14: 1217-1231. 10.1093/plankt/14.9.1217.
Article
Google Scholar
Gómez F, Moreira D, Benzerara K, López-García P: Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3. Environ Microbiol. 2011, 13: 193-202. 10.1111/j.1462-2920.2010.02320.x.
Article
Google Scholar
Medlin L, Elwood HJ, Stickel S, Sogin ML: The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene. 1988, 71: 491-499. 10.1016/0378-1119(88)90066-2.
Article
CAS
Google Scholar
Huber T, Faulkner G, Hugenholtz P: Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics. 2004, 20: 2317-2319. 10.1093/bioinformatics/bth226.
Article
CAS
Google Scholar
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ, Petrosino JF, Knight R, Birren BW: Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res. 2011, 21: 494-504. 10.1101/gr.112730.110.
Article
CAS
Google Scholar
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R: UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011, 27: 2194-2200. 10.1093/bioinformatics/btr381.
Article
CAS
Google Scholar
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF: Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009, 75: 7537-7541. 10.1128/AEM.01541-09.
Article
CAS
Google Scholar
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.
Article
CAS
Google Scholar
Good IJ: The population frequencies of species and the estimation of population parameters. Biometrika. 1953, 40: 237-264.
Article
Google Scholar
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar , Buchner A, Lai T, Steppi S, Jobb G, Förster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, König A, Liss T, Lüssmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, et al: ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32: 1363-1371. 10.1093/nar/gkh293.
Article
CAS
Google Scholar
Guindon S, Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 2003, 52: 696-704. 10.1080/10635150390235520.
Article
Google Scholar
Saitou N: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987, 4: 406-425.
CAS
Google Scholar