Table 2 Phylogenetic affiliations of the uncultured archaea based on 16S rDNA analysis
From: Molecular identification of microorganisms associated with the brine shrimp Artemia franciscana
Sequence | Clones | Closest BLASTn match to NCBI nr database | Identities (%) | Genus [confidence value] | Genbank Accession |
|---|---|---|---|---|---|
A. Archaeal sequences obtained from GSL adult Artemia | |||||
AAC1 | 26 | DQ367241.1 Haloterrigena limicola strain AX-7 | 481/485 (99) | Haloterrigena[100%] | KC696970-KC696994 |
AAC3 | 17 | EF645686.1 Haloarcula japonica strain JCM7785 | 502/504 (99) | Haloarcula[100%] | KC696995-KC697011 |
AAC4 | 2 | AJ969886.1 Uncultured archaeon, clone ss_014 | 330/354 (93) | Natronobacterium[28%] | KC697012-KC697013 |
AAC5 | 2 | AJ969890.1 Uncultured archaeon, clone ss_010a | 498/503 (99) | Halogeometricum[53%] | KC696968-KC696969 |
AAU9 | 1 | EF690637.1 Uncultured haloarchaeon clone TX4CA_82 | 497/520 (95) | Halovivax[57%] | KC696967 |
B. Archaeal sequences obtained from GSL Artemia cysts | |||||
GAC1 | 10 | AY510707.1 Halorubrum xinjiangense | 522/524 (99) | Halorubrum[100%] | KC697020-KC697029 |
GAC2 | 8 | EF645686.1 Haloarcula japonica strain JCM7785 | 522/524 (99) | Haloarcula[100%] | KC697030-KC697037 |
GAC3 | 6 | AM269467.1 Halovivax ruber type strain XH-70 T | 507/519 (97) | Halovivax[89%] | KC697015-KC697019 |
GAU1 | 1 | AY820137.2 Haloterrigena saccharevitans strain AB14 | 499/524 (95) | Haloterrigena[35%] | KC697014 |
C. Archaeal sequences obtained from SFB strain Artemia cysts | |||||
SAC1 | 2 | EF468473.1 Halorubrum tebenquichense strain JCM12290 | 521/524 (99) | Halorubrum[100%] | KC697047-KC697048 |
SAC2 | 3 | AY820137.2 Haloterrigena saccharevitans strain AB14 | 518/524 (99) | Haloterrigena[75%] | KC697049-KC697051 |
SAC4 | 4 | AY570917.1 “Natrinema ajinwuensis” strain AJ12 | 499/524 (95) | Natronorubrum[81%] | KC697041-KC697044 |
SAC5 | 2 | DQ103672.1 Uncultured euryarchaeote clone ArcH05 | 479/509 (94) | Halogeometricum[26%] | KC697045-KC697046 |
SAU1 | 1 | AJ969890.1 Uncultured archaeon clone ss_010a | 378/409 (99) | Halogeometricum[50%] | KC697039 |
SAU4 | 1 | DQ431096.1 Uncultured archaeon clone A10 | 458/478 (96) | Halogeometricum[70%] | KC697038 |
SAU5 | 1 | EF632847.1 Uncultured archaeon clone Hua-w-29 | 300/302 (99) | Halorubrum[100%] | KC697040 |
SAU7 | 1 | EF077641.1 “Halorubrum alimentarium” strain B43 | 180/181 (99) | Halorubrum[97%] | unavailable |
D. Archaeal sequences obtained from GSL water | |||||
HAC1 | 29 | AF196290.1 Archaeon JDS-1 | 503/504 (99) | Halogeometricum[49%] | KC697052-KC697086 |