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Table 2 Microorganisms present in Tirez lagoon water column and sediments identified by microscopic observation, clone-sequencing, DGGE band-sequencing and sequencing of culture isolates

From: Microbial community composition of Tirez lagoon (Spain), a highly sulfated athalassohaline environment

ID (Access no.) a

Closest relative b

No. of occurrences c

  

Rw

Dw

Rs

Ds

Bacteria

     

Actinobacteria

     

Rw_cb_7 (FJ172065)

Uncultured actinobacterium clone TDNP_LSbc97_3_28_94 (FJ516859). Semiarid wetland (Central Spain) [97%]

1

   

Microbacteriaceae [100%], Cryobacterium [57%]

Rw_db_11 (EU722702)

Uncultured organism clone SBYG_2070 (JN450257). Guerrero Negro hypersaline microbial mat [99%]

1

   

Actinomycetales [100%], Microbacteriaceae [97%], Schumannella [28%]

Rs_ib_2A (EU722709)

Arthrobacter phenanthrenivorans strain Sphe3 (NR_074770) [97%]

  

2

 

Micrococcaceae [100%], Arthrobacter [49%]

Bacteroidetes

     

Rw_cb_8 (EU725593)

Uncultured marine bacterium clone BM1-F-27 (FJ826125). Yellow Sea [97%]

1

   

Flavobacteriales [100%], Flavobacteriaceae [97%]

Ds_db_31 (EU722701)

Uncultured bacterium clone BJGMM-1s-364 (JQ800813). Soil samples from the Yellow River DeltaYellow River [98%]

   

1

Flavobacteriaceae [100%], Gillisia [99%]

Rs_cb_74 (EU722650)

Uncultured bacterium clone a43 (HM468007). Wastewater treated with with ferrous salt [99%]

  

1

 

Sphingobacteriales [100%], Cyclobacteriaceae [81%], Nitritalea [81%]

Ds_db_28 (EU722700)

Muricauda flavescens strain SW-62 (NR_042908). Salt lake, Korea [82%]

   

1

Bacteria [100%], Bacteroidetes [87%]

Rs_cb_66 (EU722655)

Uncultured organism clone MAT-CR-P2-E05 (EU246052). Hypersaline microbial mat [96%]

  

1

 

Marinilabiaceae [100%], Anaerophaga [99%]

Rs_db_2 (FJ172074)

Uncultured bacterium clone 184-32 (GU212609). Saline soil samples Qaidam Basim, China [97%]

  

1

 

Marinilabiaceae [100%], Anaerophaga [66%]

Flavobacteria

     

Rs_db_12 (EU722690)

Uncultured Bacteroidetes bacterium clone CF07-19 (FJ844036). High mountain lake, China [93%]

   

1

Flavobacteriaceae [100%], Psychroflexus [55%]

Rw_cb_19 (EU725598)

Psychroflexus sediminis strain YIM C238 (NR_044410). Haloalkaline soil [98%]

1

   

Flavobacteriaceae [100%], Psychroflexus [100%]

Rs_cb_27 (EU722652)

Psychroflexus sediminis strain YIM C238 (NR_044410). Haloalkaline soil [98%]

  

2

 

Flavobacteriaceae [100%], Psychroflexus [100%]

Rs_db_7 (EU722686)

Uncultured Salegentibacter sp. clone HAHS13.025 (HQ397000). Haloalkaline soil [98%]

2

 

5

 

Flavobacteriaceae [100%], Salinimicrobium [95%]

Rw_cb_17 (EU725597)

Psychroflexus sediminis strain YIM C238 (NR_044410). Haloalkaline soil [98%]

1

   

Flavobacteriaceae [100%], Psychroflexus [100%]

Rs_cb_80 (EU722656)

Uncultured bacterium clone MBFOS-06 (EU369165). Oyster shell [95%]

  

1

 

Flavobacteriaceae [100%], Salinimicrobium [99%]

Sphingobacteria

     

Ds_db_20 (EU722696)

Sphingobacteria bacterium clone A1503 (EU283512). Anderson lake [95%]

   

1

Bacteroidetes [100%], Flavobacteria [50%]

Bacilli

     

Rs_db_13 (EU722691)

Uncultured bacterium clone H0014 (JX391054). Marine sediment [90%]

  

2

1

Firmicutes [99%], Bacilli [93%], Bacillales [81%]

Rs_db_4 (FJ172072)

Uncultured bacterium clone B-2 (HQ703872). Qinghai lake sediment [98%]

  

1

 

Bacteria [100%], Firmicutes [92%], Bacilli [65%]

Ds_db_22 (EU722698)

Uncultured bacterium clone Kasin-B2-B05 (HE604654). Hypersaline sediments [99%]

  

1

 

Sporolactobacillaceae [100%], Sporolactobacillaceae incertae sedis [100%]

Ds_ib_4 (EU722711)

Bacillus sp. DHC09 (JQ904720). Sea surface sediment [97%]

   

1

Bacillales [100%], Bacillaceae 1 [80%], Falsibacillus [71%]

Rs_ib_3A (FJ172083)

Paenibacillus sp. 5-3 (HQ832503) Food waste [92%]

  

2

 

Bacilli [97%], Bacillales [97%], Paenibacillaceae 1 [80%]

Rs_ib_4iA (FJ172086)

Paenibacillus sp. ITCr59 (FR823415). Agricultural soil [97%]

  

5

 

Paenibacillaceae 1 [100%], Fontibacillus [95%]

Clostridia

     

Rs_db_29 (FJ172073)

Uncultured bacterium clone H3034 (JX391174). Marine sediment [98%]

   

1

Clostridiales [100%], Clostridiaceae 3 [99%], Sporosalibacterium [96%]

Alphaproteobacteria

     

Rw_cb_4 (EU725591)

Uncultured Rhodobacteraceae clone DS127 (DQ234210). River estuary [98%]

1

   

Rhodobacteraceae [100%], Roseovarius [86%]

Rw_cb_6 (FJ172064)

Roseobacter sp. B11 (DQ659411) [99%]

2

   

Rhodobacteraceae [100%], Seohaeicola [98%]

Rw_cb_2 (FJ172062)

Loktanella vestfoldensis strain R-9477 (NR_029021) [98%]

12

   

Rhodobacteraceae [100%], Loktanella [100%]

Gammaproteobacteria

     

Rs_cb_73 (EU722649)

Uncultured Idiomarina sp. clone XJ120 (EF648161). Aerobic activated sludge [94%]

  

1

 

Idiomarinaceae [100%], Pseudidiomarina [99%]

Rs_cb_1 (FJ236711)

Pseudidiomarina sp. YCSA4 (GQ246209). Water of a salt field [93%]

  

3

 

Idiomarinaceae [100%], Pseudidiomarina [100%]

Ds_ib_6 (FJ172080)

Pseudidiomarina homiensis strain CT34 (HM854277) [99%]

   

4

Idiomarinaceae [100%], Idiomarina [81%]

Rs_cb_93 (EU722651)

Uncultured proteobacterium clone TY4SP11r (JQ218797). Marine macro-alga [95%]

  

1

 

Idiomarinaceae [100%], Pseudidiomarina [98%]

Rs_cb_26 (EU722643)

Pseudidiomarina sp. 2PR54-15 (EU440967) [96%]

  

9

 

Idiomarinaceae [100%], Idiomarina [92%]

Ds_ib_11 (EU722714)

Uncultured gamma proteobacterium clone XJ85 (EF648142). Aerobic activated sludge [98%]

   

1

Idiomarinaceae [100%], Pseudidiomarina [59%]

Ds_ib_3 (EU722710)

Marinobacter adhaerens strain S20-1 (KC420687) [100%]

  

1

1

Alteromonadaceae [100%], Marinobacter [100%]

Rs_db_16 (EU722694)

Uncultured bacterium clone SN18 (JQ824910). Saline and alkaline soil [97%]

  

1

 

Gammaproteobacteria [99%], Alteromonadales [52%], Alteromonadaceae [52%]

Rw_cb_9 (FJ172066)

Uncultured bacterium clone SN26 (JQ824918). Saline and alkaline soil [98%]

1

 

1

 

Piscirickettsiaceae [100%], Methylophaga [100%]

Rw_cb_46 (FJ172063)

Uncultured bacterium clone SINP962 (HM127832). Qinghai lake [91%]

1

   

Bacteria [100%], Proteobacteria [61%], Gammaproteobacteria [61%]

Rs_cb_94 (FJ236710)

Uncultured bacterium clone Lupin-1130m-2-pse1 (EF200114). Subpermafrost fracture waters in Artic [94%]

  

1

 

Proteobacteria [99%], Gammaproteobacteria [98%], Oceanospirillales [47%]

Dw_ib_7 (EU722712)

Pseudoalteromonas sp. TA010_3 (EU308473). Solar saltern [98%]

 

1

  

Pseudoalteromonadaceae [100%], Pseudoalteromonas [100%]

Rs_db_10 (EU722688)

Halomonas sp. HL33 (KC705271). Hot lake hypersaline margin soil [95%]

  

3

1

Halomonadaceae [100%], Cobetia [41%]

Ds_ib_8 (EU722713)

Uncultured Halomonas sp. clone BPS_CK65 (HQ857613). Hydrocarbon contaminated saline [98%]

   

9

Halomonadaceae [100%], Halomonas [98%]

Rs_cb_64 (FJ172071)

Halomonas sediminis strain YIM C248 (EU135707) [98%]

  

1

 

Halomonadaceae [100%], Halomonas [83%]

Rs_db_15 (EU722693)

Uncultured bacterium clone 100307_0m_01F (KC358335). Low salinity soda lake [95%]

  

1

 

Piscirickettsiaceae [100%], Thioalkalimicrobium [94%]

Deltaproteobacteria

     

Rs_db_srb (EU722708)

Uncultured bacterium clone E6bG07 (DQ103666). Hypersaline endoevaporitic microbial mat [96%]

  

1

 

Desulfohalobiaceae [100%], Desulfohalobium [82%]

Cyanobacteria

     
 

Nostoc sp. (*)

*

   
 

Anabaena sp. (*)

*

   
 

Pseudoanabaena sp. (*)

*

   
 

Nodularia sp. (*)

*

   

Rw_ib_C (FJ172091)

Leptolyngbya sp. LEGE 07084 (HM217072). Temperate estuary [98%]

2

   

Cyanobacteria [100%], Family IV [100%], GpIV [100%]

Rw_db_6 (FJ172075)

Uncultured organism clone SBXY_5108 (JN429822). Hypersaline microbial mat [99%]

1

   

Cyanobacteria [100%], Family XIII [78%], GpXIII [78%]

Archaea

     

Halobacteria

     

Rs_ca_8 (EU722666)

Uncultured haloarchaeon clone XKL10 (JN714413). Saline lake [99%]

  

1

 

Halobacteriaceae [100%], Halobacterium [46%]

Rs_ca_62 (EU722680)

Uncultured haloarchaeon clone XKL44 (JN714440). Saline lake [98%]

  

3

 

Halobacteriaceae [100%], Halolamina [100%]

Rs_ca_16 (EU722670)

Uncultured haloarchaeon clone XKL11 (JN714414). Saline lake [96%]

  

1

 

Halobacteriaceae [100%], Halococcus [99%]

Rs_ca_29 (EU722669)

Uncultured haloarchaeon clone XKL23 (JN714423). Saline lake [96%]

  

1

 

Halobacteriaceae [100%], Halomicrobium [88%]

Rs_ca_64 (EU722681)

Halobacteriaceae archaeon EA3 (HQ197981). Salt lake brine [99%]

  

1

 

Halobacteriaceae [100%], Halolamina [100%]

Rs_ca_10 (EU722677)

Halobacteriaceae archaeon R30 (HM159607). Salted kelp [97%]

  

1

 

Halobacteriaceae [100%], Halonotius [97%]

Rs_ca_7 (EU722667)

Uncultured Halobacterium sp. clone 7A23 (AY987826). Maras salterns [99%]

  

2

 

Halobacteriaceae [100%], Halobacterium [100%]

Dw_ca_51 (FJ172059)

Halobacterium sp. AUS-2 (D32082) [97%]

 

2

  

Halobacteriaceae [100%], Halorubrum [100%]

Rs_ca_5 (EU722663)

Uncultured euryarchaeote clone DSFBPENV12arc_7C (KC465576). Brine pool water [99%]

  

7

 

Halobacteriaceae [100%], Halobacterium [66%]

Ds_da_7 (FJ172052)

Uncultured archaeon clone Kasin-A3-B06 (HE604580). Exposed salt lake sediment [99%]

   

1

Halobacteriaceae [100%], Salarchaeum [56%]

Rs_ca_49 (EU722671)

Uncultured haloarchaeon clone TX4CA_35 (EF690590). Alkaline-saline soil [94%]

  

1

 

Halobacteriaceae [100%], Halococcus [69%]

Dw_ca_34 (FJ172057)

Halorubrum kocurii (AB576124) [99%]

 

4

2

 

Halobacteriaceae [100%], Halorubrum [100%]

Dw_ca_36 (FJ172058)

Halorubrum xinjiangense strain BD-1 (NR_028205) [99%]

 

1

  

Halobacteriaceae [100%], Halorubrum [100%]

Dw_ca_59 (FJ172060)

Uncultured euryarchaeote clone SFH1E051 (FN391283). Solar saltern sediment [99%]

 

1

  

Halobacteriaceae [100%], Halorhabdus [43%]

Rs_ca_31 (EU722657)

Uncultured haloarchaeon clone XKL48 (JN714443). Saline lake [99%]

  

1

 

Halobacteriaceae [100%], Natronomonas [100%]

Rs_ca_59 (EU722658)

Uncultured haloarchaeon clone XKL48 (JN714443). Saline lake [99%]

  

1

 

Halobacteriaceae [100%], Natronomonas [100%]

Ds_da_3 (EU722706)

Natronobacterium sp. isolate 2-24-8 (AJ878084) [97%]

   

1

Halobacteriaceae [100%], Natronomonas [100%]

Rs_ca_93 (EU722674)

Halomicrobium katesii (JN120802) [99%]

  

1

 

Halobacteriaceae [100%], Halomicrobium [100%]

Rs_ca_52 (EU722672)

Haloarcula sp. AB19 (DQ471854) [99%]

  

1

 

Halobacteriaceae [100%], Haloarcula [100%]

Rs_ca_21 (EU722673)

Halophilic archaeon strain BNERC31 (AB766180). Solar saltern [96%]

  

1

 

Halobacteriaceae [100%], Haloarcula [100%]

Archaeoglobi

     

Rs_da_2 (EU722705)

Uncultured archaeon clone 11 (GQ452803). Hypersaline methane seep in canadian high Artic [97%]

  

2

 

Archaeoglobales [98%], Archaeoglobaceae [98%], Archaeoglobus [63%]

Candidate division MSBL1

     

Rs_ca_41 (EU722682)

Uncultured euryarchaeote clone Discovery_a (HQ530525). Hydrothermal brine system in the Red Sea [93%]

  

1

 

Euryarchaeota [96%], Archaeoglobi [49%], Archaeoglobales [49%]

Eukarya

     

Bascilariophyceae

     

Rw_ie_diat (FJ172078)

Nitzschia communis strain FDCC L408 (AJ867278) [99%]

1

   

Monogononta

     

Hexarthra sp. (*)

 

*

   

Branchiopoda

     

Artemia sp. (*)

 

*

   

Chlorophyceae

     

Dunaliella sp. (*)

 

*

*

  

Dinophyceae

     

Rw_ie_din (EU734574)

Woloszynskia cincta strain MALINA FT56.6 PG8 (JN934667) [98%]

1

   

Eurotiomycetes

     

Aspergillus sp. (*)

    

*

  1. a) The suffixes define technique of identification and Domain: clone library of Bacteria (cb), DGGE gel band of Bacteria (db), isolate of Bacteria (ib), clone library of Archaea (ca), DGGE gel band of Archaea (da) and microscopic identification (*).
  2. b) The sequence identity (%) was determined by two methods: BLASTN in the GenBank database (first line of the cell) [25] and Classifier in the RDP (second line of the cell) [26].
  3. c) The prefixes define the origin of the samples: (Dw) Water from dry season, (Rw) Water from rainy season, (Rs) Sediment from rainy season, (Ds) Sediment from dry season.