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Table 1 Oligonucleotides used in this study

From: Variation in spatial and temporal incidence of the crustacean pathogen Hematodinium perezi in environmental samples from Atlantic Coastal Bays

Oligo-nucleotide

Sequence (5′ to 3′)

Purpose/target

Source

PlaceF

GGGTAATCTTCTGAAAACGCATCGT

Hematodinium SSU

[29]

PlaceR

GTACAAAGGGCAGGGACGTAATC

Hematodinium SSU

[29]

D2C

CCTTGGTCCGTGTTTCAAG

Dinoflagellate LSU

[33]

1487 F

CCTGGCTCGATAGAGTTG

Hematodinium SSU

[28]

HemITSF2

TCGTAACAAGGTTTCCGTAGG

Hematodinium SSU

This study

HemITSR2

GACCCAGCCTTCACGATAAA

Hematodinium LSU

This study

M13 F

CGCCAGGGTTTTCCCAGTCACGAC

pGEM-T vector

 

M13 R

TCACACAGGAAACAGCTATGAC

pGEM-T vector

 

ITS2For

AGGTCTAATGCTTGTTGGCC

H. perezi ITS2 qPCR

This study

ITS2Rev

CACTAGTCCGAAAACCTGTG

H. perezi ITS2 qPCR

This study

HemITS2 probe

6-FAM-ACCGCTACTCTTCTT-CCGCCCT-BHQ1

H. perezi ITS2 qPCR

This study