Table 6 Results of the pathway discovery analysis indicating proteins activated in the AtHKT1;1 network based on microarray analysis of cross-talk between jasmonate and ethylene signalling in Arabidopsis seedlings using pathway studio 9

Hda1

Encodes a histone deacetylase involved in jasmonic acid and ethylene-dependent pathogen resistance

MJB20.9

Protein kinase super protein amino acid phosphorylation

ATCHX23

Member of a putative Na+/H + antiporter family

F22G5.23

Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA

EMB2753

Embryo development ending in seed dormancy

T1N24.12

Protein amino acid phosphorylation

T10O24.5

Encodes SIN3-like 6, a homologue of the transcriptional repressor

KCO4

Encodes AtTPK4, a member of the Arabidopsis thaliana K + channel family of AtTPK/KCO proteins

AT5G08415

Radical SAM superfamily protein; FUNCTIONS IN: 4 iron, 4 sulphur cluster binding, lipoic acid

F25P12.2

Hydroxyproline-rich glycoprotein family protein

MXE10.7

N-acetyltransferase activity metabolic process

T4P13.22

Encodes an SNF1-related protein kinase that physically interacts with the SCF subunit SKP1/ASK1 and the 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner and that this depends on a CUL4-PRL1 E3 ligase