Skip to main content

Table 3 Selected DGGE bands showing similarity after sequencing and NCBI-BLAST search.

From: Molecular characterization and the effect of salinity on cyanobacterial diversity in the rice fields of Eastern Uttar Pradesh, India

Band

No. of bases sequenced

Closed match

  

Description

GenBank accession number

% similarity

1

383

Nostoc sp. CCG3

DQ235803

94

2

388

Tolypothrix sp. PCC7415

AM230706

95

3

363

Anabaena variabilis NIES23

AF247593

98

4

394

Anabaena doliolum LCR1

EF066611

99

5

380

Anabaena variabilis

AB016520

97

6

384

Nostoc endophytum IAMM267

AB093490

98

7

349

Anabaena sp

X59559

98

8

364

Fischerella muscicola SAG1427

AB075985

87

9

400

Aulosira sp. PP615

AF527480

95

10

396

Nostoc sp.

Z82803

97

11

390

Aulosira fertilissima LCR4

EF066607

95

12

326

Uncultured Lyngbya sp. (Phormidium corium)

DQ146333

(EU068737)

97

(94)

13

358

Uncultured Lyngbya sp.

(Microcoleus sp.)

DQ146331

(EF654075)

98

(95)

14

387

Nostoc muscorum CENA18

AY218827

94

15

392

Anabaena anomala LCR5

EF066608

96

16

354

Anabaena oryzae LCR2

EF066606

96

17

388

Hapalosiphon sp. CCG6

DQ235806

96

18

347

Hapalosiphon welwistchii

AY034793

94

19

378

Uncultured Oscillatoria sp. clone BME114

(Oscillatoria spongeliae)

DQ917838

(AF420445)

95

(89)

20

318

Phormidium inundatum SAG79.79

AM398801

94

21

317

Aphanothece sp. OES3853

DQ264198

96

22

330

Uncultured Gloeothece sp.

(Gloeothece sp. SK40)

DQ072894

(AB067576)

96

(90)

23

357

Rivularia sp. PCC7116

AM230677

95

24

337

Gloeotrichia echinulata URA3

AM230705

94

25

376

Gloeotrichia echinulata URA3

AM230705

98

26

375

Cylindrospermum sp. A1345

DQ897365

98

27

352

Cylindrospermum sp. CENA33

AY218831

95

A

314

Tobacco Chloroplast

V00165

96

B

355

Uncultured cyanobacteria

AJ889114

96

C

364

Uncultured cyanobacteria

DQ514104

95

D

360

Uncultured diatom clone 100M1

DQ513978

95

  1. The cyanobacterial strains mentioned in parenthesis represent the close similarity of respective DGGE bands with cultured cyanobacterial strains.