Transcriptional responses to biologically relevant doses of UV-B radiation in the model archaeon, Halobacteriumsp. NRC-1

Boubriak, Ivan; Ng, Wooi Loon; DasSarma, Priya; DasSarma, Shiladitya; Crowley, David J; McCready, Shirley J

doi:10.1186/1746-1448-4-13

Table 3 Genes up-regulated 1.5-fold in UV-B experiment

From: Transcriptional responses to biologically relevant doses of UV-B radiation in the model archaeon, Halobacteriumsp. NRC-1

			Fold increase		Fold increase		Fold increase
			UV-B *30 J.m-2		UV-B *5 J.m-2		UV-B *5 J.m-2
Gene			wild type		wild type		Δ uvr A Δ uvr C
ID	name		1 h	3 h	1 h	3 h	1 h	3 h
genes up-regulated in all three UV-B experiments
17	vng17	NA	1.88	1.55	1.59	1.48	1.46	2.45
779	*arj* 1	Archaeal RecJ-like exonuclease	1.62	1.73	1.34	1.57	1.23	1.58
884	*top* 6A	DNA topoisomerase VI subunit A	1.48	1.58	1.57	1.82	1.35	1.68
885	*top* 6B	DNA topoisomerase VI subunit B	1.54	1.54	1.31	1.74	1.23	1.68
1642	vng1642	Hypothetical protein VNG1642	4.44	3.82	2.06	2.75	2.10	1.25
1644	*nrd* J	Class II ribonucleotide reductase alpha subunit	3.65	3.59	1.87	2.53	1.67	2.53
2174	vng2174	NA	1.47	1.80	1.40	1.69	-1.65	1.92
2473	*rad* A1	RadA/RecA recombinase	9.32	6.74	2.42	4.66	2.21	3.26
6194	vng6194	NA	1.80	2.20	1.88	2.44	1.13	4.04
*genes up-regulated only in wild type UV-B 30 J and UV-B 5 J experiments*
280	vng280	hypothetical protein VNG0280	1.66	1.54	1.48	1.49	1.14	1.40
2600	*trx* A2	thioredoxin	1.55	1.36	1.51	1.38	1.14	-1.37
*genes up-regulated only in UV-B 5 J experiments, wild-type and mutant**
18	vng18	NA	1.20	1.26	1.27	1.50	1.57	3.03
20	vng20	NA	1.10	1.04	1.10	1.84	-1.10	1.70
6339	vng6339	NA	1.10	-1.05	1.99	1.02	1.44	2.30
6361	*npa*	Predicted transposase	1.16	1.03	2.10	2.73	1.66	3.01
*genes up-regulated only in wild type UV-B 30 J and UV-B 5 J mutant experiments*
2115	vng2115	NA	1.64	1.78	1.43	1.19	1.03	1.60
5233	vng5233	NA	-1.05	1.57	-1.08	1.08	1.11	1.46
6316	*arc* C	Carbamate kinase	2.63	1.46	1.35	1.01	1.79	1.00

Note: NA = not annotated

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