Transcriptional responses to biologically relevant doses of UV-B radiation in the model archaeon, Halobacteriumsp. NRC-1

Boubriak, Ivan; Ng, Wooi Loon; DasSarma, Priya; DasSarma, Shiladitya; Crowley, David J; McCready, Shirley J

doi:10.1186/1746-1448-4-13

Table 2 Genes up-regulated 1.5-fold or more by both UV-C (30 J/m²) and a damage-equivalent dose of UV-B

From: Transcriptional responses to biologically relevant doses of UV-B radiation in the model archaeon, Halobacteriumsp. NRC-1

Gene ID	Gene name	Functional group	Predicted gene product	Fold increase UV-C 30 J/m²		Fold increase UV-B *30 J/m²
				1 h	3 h	1 h	3 h
146	vng146	Unknown	NA	-1.02	1.49	-1.85	2.01
261	vng261	Unknown	NA	2.20	2.09	1.85	1.36
280	vng280	Unknown	NA	1.33	1.47	1.66	1.54
435	vng435	Unknown	NA	-1.11	1.71	1.44	2.11
436	*nha* C1	Transport	Na+/H+ antiporter	1.19	1.79	1.23	1.99
559	*apt*	Nucleotide metabolism	Adenine phosphoribosyltransferase	1.69	1.54	1.52	1.47
765	vng765	Unknown	NA	1.69	1.54	1.53	1.75
779	*arj* 1	DNA metabolism	Archaeal RecJ-like exonuclease	1.35	1.73	1.62	1.73
1262	*eif* 2B	Translation	translation initiation factor eIF-2 subunit beta	1.66	1.61	1.25	1.66
1351	*acl* R5	Transcription and regulation	Transcription regulator	1.53	1.42	1.51	1.66
1630	vng1630	Unknown	NA	1.55	1.45	1.58	1.40
1642	vng1642	Unknown	NA	3.49	6.31	4.44	3.82
1644	*nrd* J	Nucleotide metabolism	Class II ribonucleotide reductase alpha subunit	2.24	3.87	3.65	3.59
2014	vng2014	Unknown	NA	1.55	1.19	1.68	2.26
2115	vng2115	Unknown	NA	1.62	1.48	1.64	1.78
2167	*dbp*	DNA metabolism	DNA binding protein eukaryotic-like	1.34	1.86	2.17	1.57
2426	*act*	Energy metabolism	Acyl-CoA thioester hydrolase	1.10	2.46	1.21	1.66
2470	vng2470	Unknown	NA	1.46	1.56	1.37	1.60
2473	*rad* A1	DNA	Rad51/RecA recombinase	8.80	8.14	9.32	6.74
2600	*trx* A2	Nucleic acid Metabolism	Thioredoxin	1.26	1.56	1.55	1.36
3020	*trn* 23	Translation	Leu-tRNA-CAA	1.55	1.43	1.14	1.66
3035	*trn* 37	Translation	His-tRNA-GTG	-1.38	1.47	1.74	1.50
3041	*trn* 42	Translation	Cys-tRNA-GCA	1.08	1.80	1.55	1.76
5003	vng5003	Unknown	NA	1.50	1.68	1.07	1.58
5244	vng5244	Unknown	NA	1.34	1.77	1.46	1.61
6315	*arc* B	Amino acid metabolism	Ornithine carbamoyltransferase	3.64	1.25	2.05	1.01
6316	*arc* C	Amino acid metabolism	Carbamate kinase	6.66	1.34	2.63	1.46
6317	*arc* A	Amino acid metabolism	Arginine deiminase	2.40	1.67	2.70	1.01
6332	vng6332	Unknown	NA	1.58	1.53	1.34	1.60

Note: NA = not annotated

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