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Table 3 Selected genes significantly altered under low temperature growth

From: Transcriptional profiling of the model Archaeon Halobacteriumsp. NRC-1: responses to changes in salinity and temperature

Gene ID Gene name Former name COG Predicted function Fold change values log2(x) ratio Standard deviation of log2(x) ratio
101 cspD1   1278 cold shock protein 2.307 0.935 0.912
134 hpyA   2036 archaeal histone -1.525 -0.584 0.269
153 mbl vng153   mreB-like protein 1.685 0.708 0.365
192 ftsZ2   206 cell division protein 1.635 0.696 0.203
254 tfbG   1405 transcription initiation factor IIB 2.259 1.132 0.356
375 secE   2443 protein translocase -2.004 -0.982 0.244
491 dnaK   443 heat shock protein -1.654 -0.695 0.303
494 grpE   576 heat shock protein -1.477 -0.522 0.353
559 apt   503 adenine phosphoribosyltransferase -2.143 -1.041 0.410
679 acd4   1960 acyl-CoA dehydrogenase 1.516 0.531 0.477
683 fbaA   1830 possible 1,6-fructose biphosphate aldolase -1.606 -0.673 0.171
823 gspE2   0630 type II secretion system protein -1.624 -0.623 0.472
887 gyrB   187 DNA gyrase subunit B -1.422 -0.458 0.397
905 pmu2   1109 phosphomannomutase -1.800 -0.833 0.206
974 cheY   784 chemotaxis protein -1.956 -0.923 0.349
1233 pepQ2   6 X-pro aminopeptidase homolog 3.430 1.741 0.330
1339 lfl3   318 long-chain fatty-acid-CoA ligase 2.174 1.075 0.366
1488 boa2   3413 bacterio-opsin activator-like protein 1.551 0.612 0.231
1690 rpl4e   0088 50S ribosomal protein L4E -1.685 -0.675 0.474
1703 rps4e   1471 30S ribosomal protein S4E -1.598 -0.599 0.477
1727 cmk   1102 cytidydylate kinase -2.254 -1.154 0.231
1836 cspD2   1278 cold shock protein 3.112 1.322 0.990
1944 purS vng1944 1828 phosphoribosylformylglycinamidine synthase, PurS component -1.523 -0.606 0.032
1945 purQ purL2 47 phosphoribosylformylglycinamide synthase I, glutamine amidotransferase domain -1.509 -0.590 0.108
2063 aca   183 probable acetyl-CoA acetyltransferase 1.421 0.483 0.263
2135 atpD   1394 H+-transporting ATP synthase subunit D -2.012 -0.998 0.173
2138 atpB   1156 H+-transporting ATP synthase subunit B -1.381 -0.449 0.221
2142 atpE   1390 H+-transporting ATP synthase subunit E -1.716 -0.728 0.389
2143 atpK   636 H+-transporting ATP synthase subunit K -2.926 -1.535 0.203
2144 atpI   1269 H+-transporting ATP synthase subunit I -1.802 -0.798 0.388
2226 cctA   459 Thermosome subunit alpha -1.735 -0.713 0.489
2302 yuxL   1506 acylaminoacyl-peptidase 2.096 0.951 0.601
2349 dppA   747 dipeptide ABC transporter dipeptide-binding 1.609 0.634 0.486
5028 gvpE1    GvpE protein 3.097 1.381 0.883
5029 gvpD1    GvpD protein 3.396 1.513 0.875
5030 gvpA1    GvpA protein 8.018 2.761 0.860
5032 gvpC1    GvpC protein 3.985 1.761 0.844
5033 gvpN1    GvpN protein 5.161 2.174 0.764
5034 gvpO1    GvpO protein 1.824 0.814 0.395
6201 hsp5   71 heat shock protein -4.784 -2.187 0.446
6270 gldA   371 sn-glycerol-1-phosphate dehydrogenase -2.676 -1.396 0.266
6309 pyrB   540 aspartate carbamoyltransferase catalytic subunit -1.767 -0.817 0.121
6311 pyrI   1781 aspartate carbamoyltransferase regulatory chain -1.835 -0.855 0.244