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Table 4 459 bp of COI sequenced for 90 individuals of P. chalceus and 22 of P. littoralis

From: Inter- and intraspecific genetic and morphological variation in a sibling pair of carabid species

GATTAGTTCCTTTAATATTxAGCACCxGATATAGCxTTTCCTCGAATAAATAATATAAGTTTTTGAxTATTACCTCCTTCxTTAACACTACTTTTAATAAGxAGx

. . . . . . . . . . . . . . . . .1. . . . . . .2. . . . . . . .3 . . . . . . . . . . . . . . . . . . . . . . . . . . 4 . . . . . . . . . . . 5. . . . . . . . . . . . . . . . . . 6. . 7

ATGGTAGAAAGAGGxGCTGGTACAGGATGAACTGTxTAxCCTCCxxTATCxTCTGxTATTGCACATAGAGxGGCTTCAGTAGATTTAGCxATTTTTAGTCTTCATT

. . . . . . . . . . . . . . . 8. . . . . . . . . . . . . . . . . . 9 . .10 . . . 1112 . . 13 . . 14 . . . . . . . . . . . .15 . . . . . . . . . . . . . . . 16 . . . . . . . . . . . . .

TAGCAGGxGTxTCTTCAATTTTxGGAGCTGTxAATTTTATTACAACTATTATTAATATACGATCAxTTGGAATAACATTTGAcCGAATACCTTTATTTGTxTGATC

. . . . . . 17 . 18 . . . . . . . . 19 . . . . . . 20 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21 . . . . . . . . . . . . . . 22 . . . . . . . . . . . . . . .23 . . .

TGTAGGAATTACTGCTTTACTTTTATTATTATCATTACCAGTTTTAGCTGGAGCAATTACxATACTTTTAACxGATCGAAATTTAAATACxTCxTTTTTTGACCCx

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .24 . . . . . . . . .25 . . . . . . . . . . . . . . 26 . 27. . . . . . . . 28 .

GCxGGAGGAGGAGAxCCxATTTTATAxCAACA

. .29 . . . . . . . . . 30 . .31 . . . . . . 32 . . . .

 

Haplotype sequence information

Haplotype No.

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

20

21

22

23

24

25

26

27

28

29

30

31

32

1

A

T

A

C

T

C

A

A

A

T

T

T

T

C

G

T

A

T

A

A

A

C

T

A

T

A

A

T

T

C

A

C

2

A

T

A

C

T

C

A

A

A

T

T

T

T

C

G

T

A

C

A

A

A

C

T

A

T

A

A

T

T

C

A

C

3

A

T

A

C

T

C

A

A

A

T

T

T

T

C

G

T

A

T

A

A

A

T

T

A

T

A

A

T

T

C

A

C

4

A

T

C

C

T

C

A

A

A

T

T

T

T

C

G

T

A

T

A

A

A

T

T

A

T

A

A

T

T

C

A

C

5

A

A

A

T

A

T

T

T

T

C

C

C

A

T

T

A

G

T

G

T

G

T

C

T

T

T

T

A

A

T

T

T

6

A

A

A

T

A

T

T

T

T

C

C

C

A

T

T

A

G

T

G

T

G

T

C

T

C

T

T

A

A

T

T

T

7

A

A

A

T

A

T

T

T

T

C

C

C

A

T

T

A

A

T

G

T

G

T

C

T

T

T

T

A

A

T

T

T

8

G

A

A

T

A

T

T

T

T

C

C

C

A

T

T

A

G

T

G

T

G

T

C

T

T

T

T

A

A

T

T

T

9

A

A

A

T

A

T

T

T

T

C

C

C

A

T

T

A

G

T

G

T

T

T

C

T

T

T

T

A

A

T

T

T

 

FREQUENCY OF HAPLOTYPES

 

POGONUS CHALCEUS

POGONUS LITTORALIS

               

Haplotype No.

CANAL1

POND1

MOK

ZWC

HEI

OOS

NIE

CAN

SOM

MSM

GAC

GIR

CAMA

ALB

GUE1

ZWC

ROU

               

1

8

6

6

7

7

6

    

2

7

                    

2

3

                               

3

  

1

   

7

5

6

4

1

 

6

6

                  

4

        

1

                       

5

              

5

3

6

               

6

                

1

               

7

               

4

                

8

              

1

                 

9

              

1

                 
  1. Bold lower case letters show variable positions numbered from 1 to 32 which are not position numbers in the gene. Dots indicate invariable positions. The table shows the variable sites of the haplotypes. The table below shows the haplotype frequency in each population.